A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
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Sep 11, 2021 - Python
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fiji-plugin
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a “batteries-included” distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Here are 7 public repositories matching this topic...
Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics
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Jun 8, 2026 - Python
ImageJ scripts for stereology and morphometry
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Jul 19, 2017 - Python
Fiji plugins for qualitative image annotations + analysis workflows for image-classification and data-visualization
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Apr 7, 2021 - Python
Virtual Orientation Tool FIJI (VOTj) : A Fiji plugin for object centering and alignment
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Dec 7, 2024 - Python
Fiji/ImageJ plugin to help measuring linear distances.
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Feb 1, 2023 - Python
RoiEditor that can run as plugin for Fiji or as standalone Jython application
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Jul 24, 2025 - Python
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