Pass export() inputs in declaration order - #275
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Nextflow binds process inputs by position. In the export(...) call in nf/ui.nf, five channels were passed in a different order than the export process declares them, so they were staged under the wrong directories: - filtered_protein_alignments went to the rnaseq_long_align_report slot, so align.asn was published as stats/rnaseq_long/align.asn instead of filtered_protein_alignments/align.asn; - minimap2_stats went to the filtered_protein_alignments slot; - rnaseq_long_align_report, rnlp_filter_est_align_stats and minimap2_stats were shifted among the stats/rnaseq_long slots. Reorder the arguments to match the declaration. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
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Closes #274.
Reorders the
export(...)arguments innf/ui.nfto match the process declaration, sofiltered_protein_alignments,rnaseq_long_align_report,rnlp_filter_est_align_statsandminimap2_statsare staged in the right directories. Nothing else changes.Testing: with this change, a full
input_D_farinae_smallrun publishesfiltered_protein_alignments/align.asnand no longer puts it understats/rnaseq_long/.