Issues

• export() inputs passed out of order in nf/ui.nf; filtered protein alignments published under stats/rnaseq_long/

  ncbi/egapx#274 · Filter by author richard-burhans opened on Oct 1, 2026
  1

• run_proteins_by_taxid error

  ncbi/egapx#273 · Filter by author NickPanyushev opened on Oct 1, 2026
  1

• Proteins are not found for Nymphaea taxid during EGAPx annotation

  ncbi/egapx#271 · Filter by author kingbin97 opened on Sep 26, 2026
  1

• BUG: changing limits from docker container

  ncbi/egapx#270 · Filter by author Alteroldis opened on Sep 21, 2026

• README correcting request.

  ncbi/egapx#269 · Filter by author Alteroldis opened on Sep 19, 2026
  1

• lds2_indexer not found during rnaseq_collapse

  ncbi/egapx#267 · Filter by author gdroc opened on Sep 4, 2026
  1

• Segmentation fault in rnaseq_collapse_new

  ncbi/egapx#264 · Filter by author Keerlllws opened on Aug 19, 2026
  1

• How to increase parallelism of minimap2_wnode_fasta in EGAPx?

  ncbi/egapx#263 · Filter by author zhoudreames opened on Aug 8, 2026
  3

• Huge genome annotation issue

  ncbi/egapx#262 · Filter by author lmnano opened on Aug 4, 2026
  33

• rnaseq_collapse fails with a CStringException::eConvert error

  ncbi/egapx#256 · Filter by author ymilesz opened on Jun 15, 2026
  9

• On the masking step

  ncbi/egapx#253 · Filter by author DaniPaulo opened on Jun 5, 2026
  3

• Newer nextflow version (26.04.x) import errors

  ncbi/egapx#251 · Filter by author brantfaircloth opened on Jun 2, 2026
  3

• Memory Configuration Issues for Large Genomes

  ncbi/egapx#250 · Filter by author biolittleboy opened on Jun 1, 2026
  6

• star_wnode writes ~5.5 TB of temporary files to disk when TMPDIR is set in slurm.config

  ncbi/egapx#249 · Filter by author nicolasmalexandre opened on May 29, 2026
  9

• Segmentation fault in rnaseq_collapse

  ncbi/egapx#246 · Filter by author ld9866 opened on May 14, 2026
  9

• ‌Arabidopsis thaliana rnaseq_collapse Segmentation fault

  ncbi/egapx#245 · Filter by author kingbin97 opened on May 12, 2026
  6

• Isoform nomenclature question

  ncbi/egapx#217 · Filter by author MonicaPoelchau-USDA opened on Mar 24, 2026
  5

• Use of RNA-seq strand information in EGAPX pipeline

  ncbi/egapx#172 · Filter by author BitaoQiu opened on Sep 8, 2025
  12

• BUG: Treats local read files as SRR, if it supplied as path to read list.

  reads error
  ncbi/egapx#165 · Filter by author Alteroldis opened on Aug 25, 2025
  19