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colindaven/README.md

Hi there 👋

I'm a bioinformatics scientist currently working on plant genomics.

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  1. MHH-RCUG/nf_wochenende MHH-RCUG/nf_wochenende Public

    A nextflow version of the Wochenende reference metagenome binning and visualization pipeline

    Python 15 2

  2. MHH-RCUG/Wochenende MHH-RCUG/Wochenende Public

    Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

    Python 37 16

  3. awesome-pangenomes awesome-pangenomes Public

    A list of software for pangenomics

    172 31

  4. rs_demultiplex rs_demultiplex Public

    Simple demultiplexing of FASTQ, one oligo (barcode) at a time

    Rust 6 1

  5. blacklister blacklister Public

    Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools

    Shell 4 1

  6. guppy_on_slurm guppy_on_slurm Public

    Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

    Shell 16 5