Hi there 👋
You may also see my website – abolfazlarab.com
Manuscripts:
- GilbertLabUCSF/DDRi-screens | Functional genomics screens of DNA Damage Response inhibitors ... 🚧
- GilbertLabUCSF/Decitabine-treatment | Multi-Omics study of DNA hypomethylation
- GilbertLabUCSF/CanDI | Cancer Data Integrator
Functional-Genomics and Chemical-Genetics projects:
- ezformer | Run enformer like models, get prediction tracks, and perform benchmarking ... 🚧
- pyCCG | python toolbox for Computational Chemical Genomics (CCG) research projects ... 🚧
- FunGI-cap | Functional Genomics Screening Datasets, Tools, and Resources ... 🚧
- Cancer-Cell-Encoder | (ARCHIVED)
- ArcInstitute/ScreenPro2 | Flexible analysis of high-content CRISPR screening
Bulk and single-cell Multi-Omics tools
- RNAMultiOmics | A multi-omics analytic framework to study RNA dynamics ... 🚧
- scez | Single Cell Analysis, Easy Mode! ... 🚧
- MultiOmics | A multi-omics analytic framework to study RNA dynamics
- pager | PAGE algorithm run and downstream analysis
- sc-haircut-net | M.Sc. thesis project!
- RNAseq-tutorials, goodarzilab/WES, QuantSeq-FWD-with-UMIs, imRIP, HERVs
Projects at Harvard Medical School - DBMI and Zitnik Lab:
- UDNBioSimilarity | Investigating Biological Similarities among Rare Diseases (not public!)
- mims-harvard/TDC | Artificial intelligence foundation for therapeutic science
- mims-harvard/PrimeKG | Precision Medicine Knowledge Graph (PrimeKG)