NCBI - National Center for Biotechnology Information/NLM/NIH

PSSS-Bytes2Biology Public

Petabyte Scale Sequence Search Initiative

sra-tools Public

SRA Tools

ngs-tools Public

ncbi-cxx-toolkit-public Public

NCBI C++ Toolkit package sources

tree-tool Public

Incremental building of phylogenetic distance tree

gaptools Public

dbGaP data validation tool repo

vadr Public

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

datasets Public

NCBI Datasets is an experimental resource for finding and building datasets

sra-human-scrubber Public

An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.

elastic-blast Public

ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective

DbGaP-FHIR-API-Docs Public

The documentation repository for the dbGaP FHIR API.

GNorm2 Public

amr Public

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

AceView Public

Acedb object oriented database engine and AceView/MAGIC RNA_seq pipeline, NCBI/NLM/NIH

cxx-toolkit Public

pgap Public

NCBI Prokaryotic Genome Annotation Pipeline

ncbi-vdb Public

ncbi-vdb

BioCPT Public

elastic-blast-docs Public

ElasticBLAST documentation

docker Public

icn3d Public

web-based protein structure viewer and analysis tool interactively or in batch mode

ncbi-logging Public

Log monitoring and gathering infrastructure to feed analytics

ncbi_doc_template Public

sars2variantcalling Public

The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized format

ncbi-cxx-toolkit-conan Public

NCBI C++ Toolkit package recipe

magicblast Public

AIONER Public

AIONER

TPMCalculator Public

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

biomedical-citation-selector Public

fcs-gx Public

Foreign Contamination Screening - GX source code