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Issues list

Prefecth-orig and fasterq-dump not working when downloading SRA files (v3.0.5)
#816 opened May 9, 2023 by CamiloOcho
Downloading smart-seq2 fastq files from NCBI GEO
#815 opened May 3, 2023 by malonzm1
tools can not be easily run on MacOS "because the developer cannot be verified."
#809 opened Apr 18, 2023 by stenglein-lab
Failing to compile sra-tools on openSUSE Linux.
#800 opened Mar 29, 2023 by V-Z
2
Filtered and clipped reads
#795 opened Mar 21, 2023 by MagdalenaZZ
Feature request: increase speed of C++ API for streaming reads from alignment-based SRA records
#794 opened Mar 21, 2023 by jgans
fasterq-dump "--only-aligned" and "--only-unaligned" ignored when combined with "--fasta"
#793 opened Mar 21, 2023 by jgans
vdb-validate exit code
#774 opened Feb 10, 2023 by tudor-turcu
10
Build error in ngs-java: wrong working directory
#771 opened Feb 9, 2023 by lexming
1
2
How to change a Single-molecule long-read sequencing sra file into PacBio bam file?
#770 opened Feb 7, 2023 by wu116
6
Not getting all files when doing fasterq-dump
#767 opened Jan 30, 2023 by mdanb
4
add bash to container
#761 opened Jan 9, 2023 by erinyoung
fastq-dump not working with docker
#758 opened Jan 1, 2023 by MyhFe
1
Building SRA-tools in Arch linux [File 'Makefile.config.linux.x86_64' is missing] error
#756 opened Dec 29, 2022 by kbipinkumar
1
prefetch heartbeat/progress does not seem to work
#752 opened Dec 16, 2022 by jlongo62
10
prefetch CT image data error
#738 opened Nov 16, 2022 by angadkalra
2
fasterq-dump.3.0.0 err: index.c get_nearest_offset() -> too many rounds
#732 opened Nov 6, 2022 by mpuzio
2
prefetch errors out if number of files is greater than 516
#722 opened Oct 3, 2022 by angadkalra
MD5 does not match in decryption
#718 opened Sep 20, 2022 by bwspitzer-bwh
2
Getting some global information without downloading the file(s)
#715 opened Sep 13, 2022 by anachshon
2
SRR6305512 - Cannot KStblHttpFileRead error
#689 opened Aug 3, 2022 by xexpanderx
8
fasterq-dump --print-read-nr unknown option
#688 opened Aug 1, 2022 by dereckdemezquita
3
prefetch error: "path invalid while opening directory within file system module - could not build vfs-resolver"
#666 opened Jun 28, 2022 by afowler56
8
Temp error
#640 opened May 18, 2022 by VikArz02
temp error
#631 opened Apr 25, 2022 by VikArz02
ProTip! What’s not been updated in a month: updated:<2023-04-15.