NCBI - National Center for Biotechnology Information/NLM/NIH

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tree-tool Public
Incremental building of phylogenetic distance tree

DM 9 5 0 0 Updated Jul 20, 2023
sra-human-scrubber Public
An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.

Shell 34 5 2 0 Updated Jul 19, 2023
ncbi-vdb Public
ncbi-vdb

C 81 39 13 1 Updated Jul 19, 2023
sra-tools Public
SRA Tools

C 933 232 59 6 Updated Jul 19, 2023
gtax Public

Python 1 2 0 0 Updated Jul 19, 2023
amr Public
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

C++ 176 27 9 0 Updated Jul 19, 2023
ncbi-cxx-toolkit-public Public
NCBI C++ Toolkit package sources

C++ 29 11 1 0 Updated Jul 19, 2023
docker Public

Dockerfile 42 34 3 0 Updated Jul 18, 2023
DbGaP-FHIR-API-Docs Public
The documentation repository for the dbGaP FHIR API.

Jupyter Notebook 1 3 0 0 Updated Jul 18, 2023
cxx-toolkit Public

HTML 17 Unlicense 48 0 1 Updated Jul 18, 2023

bioinformatics ncbi ngs genomics jupyter-notebook