Monarch Initiative

Repositories

• mondo

  Mondo ontology

  ontology mondo monarchinitiative obofoundry
  Prolog 15 42 374 (17 issues need help) 23 Updated Aug 13, 2020

• QC
  Shell 1 0 0 0 Updated Aug 12, 2020

• IDGKG-gen
  Python 1 1 14 0 Updated Aug 12, 2020

• release-utils

  Utilities for generating tsv downloads, release diffs, and other reports from scigraph and solr
  Python 0 1 0 0 Updated Aug 11, 2020

• embiggen

  Embedding generator - embiggen
  Jupyter Notebook BSD-3-Clause 6 8 9 0 Updated Aug 11, 2020

• hpo-web-config

  static files for HPO website
  BSD-3-Clause 3 0 1 1 Updated Aug 11, 2020

• solr-docker-monarch-search

  Docker image to create the solr index for the search core.

  solr docker-image monarchinitiative
  Dockerfile BSD-3-Clause 1 0 0 0 Updated Aug 10, 2020

• phenomics

  for outreach and workshops
  1 0 0 1 Updated Aug 10, 2020

• hpoannotqc

  HPO Annotation QC
  Java MIT 2 4 0 0 Updated Aug 9, 2020

• phenol

  phenol: Phenotype ontology library
  Java 3 9 5 1 Updated Aug 9, 2020

• monarch-ui

  A modern web UI for revealing and understanding Monarch Initiative information.

  monarchinitiative
  Vue BSD-3-Clause 21 7 57 (1 issue needs help) 0 Updated Aug 6, 2020

• jenkins

  Jenkins configuration for monarch
  0 0 3 0 Updated Aug 5, 2020

• dipper

  Data Ingestion Pipeline for Monarch

  monarchinitiative
  Python BSD-3-Clause 16 35 228 0 Updated Aug 4, 2020

• ols_monarch

  A dockerised version of the OLS for Monarch Ontologies
  Makefile 0 1 0 0 Updated Aug 1, 2020

• phenogrid

  The phenogrid widget

  javascript html gene widget data-visualization phenotypes visualize-data
  JavaScript 11 8 19 0 Updated Aug 1, 2020

• MAxO

  Medical action ontology

  monarchinitiative
  Makefile 2 4 35 1 Updated Jul 28, 2020

• monochrom

  Chromosomal ontology
  Makefile 1 0 2 1 Updated Jul 27, 2020

• pubman

  Publication Manager
  Java MIT 0 0 0 0 Updated Jul 23, 2020

• PhenoteFX

  PhenoteFX

  hpo monarchinitiative
  Java BSD-3-Clause 1 2 6 1 Updated Jul 23, 2020

• scigraph-docker

  SciGraph docker image and monarch specific configurations
  Shell 2 0 4 0 Updated Jul 21, 2020

• owlsim-v3

  Ontology Based Profile Matching

  java ontology semantic-similarity profile-matching monarchinitiative owlsim
  JavaScript 4 11 50 3 Updated Jul 17, 2020

• monarch-ontology

  Top level monarch importer ontology
  Makefile 2 2 19 1 Updated Jul 16, 2020

• HeliumPhenotypeSearch

  Phenotype search with Annotations and Asset discovery
  Vue 2 0 1 1 Updated Jul 16, 2020

• SEPIO-ontology

  Ontology for representing scientific evidence and provenance information

  provenance evidence monarchinitiative
  6 19 23 1 Updated Jul 14, 2020

• analysis-sandbox

  Scripts to analyze monarch data sets and scigraph

  monarchinitiative
  Jupyter Notebook 1 1 2 0 Updated Jun 16, 2020

• loinc2hpo

  Java library to map LOINC-encoded test results to Human Phenotype Ontology

  healthcare fhir loinc ehr hpo monarchinitiative
  Java 3 10 9 1 Updated Jun 15, 2020

• monarch-stack

  Specification for building monarch with docker-compose
  Makefile 0 0 0 0 Updated May 14, 2020

• solr-docker-monarch-golr

  Docker image to create the solr index for the golr core.

  solr docker-image monarchinitiative
  Shell BSD-3-Clause 1 0 0 0 Updated May 7, 2020

• glycophenotype-analysis Archived

  Analysis of glyco-phenotypes in the HPO
  Jupyter Notebook 0 1 0 0 Updated Apr 23, 2020

• hpo-survey-analysis Archived

  Toolkit for analyzing surveys utilizing the HPO
  Jupyter Notebook 0 0 0 0 Updated Apr 22, 2020