egapx/LICENSE at main · ncbi/egapx · GitHub

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CONTENTS

  Public Domain Notice
  Exceptions (for bundled 3rd-party code)


================================================================================
                          PUBLIC DOMAIN NOTICE
             National Center for Biotechnology Information

This software was created as part of the author(s) official duties as a United
States Government employee(s), is a "United States Government Work" and is not
subject to copyright in the United States (17 USC 105). The National Library of
Medicine (NLM) and the U.S. Government have not placed any restriction on its
use or reproduction.

The NLM disclaims all warranties, express or implied, including warranties of
performance, merchantability, or fitness for any particular purpose.

Please cite NLM in any work or product based on this material.

EGAPx makes use of various third-party tools which carry their own licenses.

The list of third-party tools and their licenses are provided here:
================================================================================
EXCEPTIONS (in all cases excluding NCBI-written makefiles):


Location: /img/gp/third-party/STAR
Authors:  A Dobin et al.
License:  MIT License
          [https://github.com/alexdobin/STAR/blob/master/LICENSE]

Location: /img/gp/third-party/samtools
Authors:  P Danecek et al.
License:  The MIT/Expat License
          [https://github.com/samtools/samtools/blob/develop/LICENSE]

Location: /img/gp/third-party/miniprot
Authors:  H Li
License:  MIT License
          [https://github.com/lh3/miniprot/blob/master/LICENSE.txt]

Location: /img/gp/third-party/diamond
Authors:  B Buchfink et al.
License:  GNU GENERAL PUBLIC LICENSE
          [https://github.com/bbuchfink/diamond/blob/master/LICENSE]

Location: /img/gp/third-party/seqkit
Authors:  W Shen et al.
License:  MIT License
          [https://github.com/shenwei356/seqkit/blob/master/LICENSE]

Location: /img/gp/third-party/infernal
Authors:  E Nawrocki et al.
License:  BSD License
          [https://github.com/EddyRivasLab/infernal/blob/master/LICENSE]

Location: /img/gp/third-party/tRNAscan-SE
Authors:  P Chan et al.
License:  GPL-3.0
          [https://github.com/EddyRivasLab/infernal/blob/master/LICENSE]

Location: /img/gp/third-party/hmmer
Authors:  S Eddy
License:  BSD License
          [https://github.com/EddyRivasLab/hmmer/blob/master/LICENSE]

Location: /usr/local/bin/busco
Authors:  Manni et al.
License:  MIT License
          [https://gitlab.com/ezlab/busco/-/blob/master/LICENSE]

Location: /img/gp/third-party/minimap2
Authors:  H Li
License:  MIT License
          [https://github.com/lh3/minimap2/blob/master/LICENSE.txt]

Resource: Swiss-prot dataset
Authors:  The UniProt Consortium
License:  [https://www.uniprot.org/help/license]

Location: /usr/local/bin/multiqc
Authors:  P Ewels et al.
License:  GNU General Public License v3.0
          [https://github.com/MultiQC/MultiQC/blob/main/LICENSE]

================================================================================

Copyright F.A.Q.


--------------------------------------------------------------
Q. Our product makes use of the NCBI source code, and we did changes
   and additions to that version of the NCBI code to better fit it to
   our needs. Can we copyright the code, and how?

A. You can copyright only the *changes* or the *additions* you made to the
   NCBI source code. You should identify unambiguously those sections of
   the code that were modified, e.g. by commenting any changes you made
   in the code you distribute. Therefore, your license has to make clear
   to users that your product is a combination of code that is public domain
   within the U.S. (but may be subject to copyright by the U.S. in foreign
   countries) and code that has been created or modified by you.


--------------------------------------------------------------
Q. Can we (re)license all or part of the NCBI source code?

A. No, you cannot license or relicense the source code written by NCBI
   since you cannot claim any copyright in the software that was developed
   at NCBI as a 'government work' and consequently is in the public domain
   within the U.S.


--------------------------------------------------------------
Q. What if these copyright guidelines are not clear enough or are not
   applicable to my particular case?

A. Contact us. Send your questions to 'toolbox@ncbi.nlm.nih.gov'.